From Homestar Runner Wiki
Several of the characters have alternate versions of them, such as puppets and Powered by The Cheat.
Puppets
Powered by The Cheat
Image | Description | Appearences
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| A poorly drawn Strong Bad. | Everybody to the Limit
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| An even worse looking Strong Bad. | crazy cartoon, mile, animal
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| Another poorly drawn Strong Bad, with purple boxing gloves and the head of his figurine. | New Boots
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| Yet another poorly drawn Strong Bad. | The Cheat Theme Song, Main Page 15
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| The Cheat's self-portrait. | The Cheat Theme Song, Everybody to the Limit, crazy cartoon, mile
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| Another poorly-drawn version of The Cheat, complete with cool boots. | New Boots, Hip Hop Dance
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| A poorly-drawn version of Coach Z. The Cheat seems to like purple. | crazy cartoon, mile, New Boots, Hip Hop Dance
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| A slightly better looking version of Coach Z. | Hip Hop Dance
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| A poorly-drawn version of Homestar Runner. | The Cheat Theme Song, animal, mile, New Boots
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| Another, slightly better version of Homestar Runner. | Main Page 15
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| A poorly drawn version of Marzipan. | mile
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| Another poorly drawn Marzipan. | marzipan
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| Yet another poorly drawn Marzipan, this one isn't as horrifying as the others. | Seasonal Sweaters
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| A poorly drawn Strong Sad. | Main Page 15
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| A much cartoonier Strong Sad design. | Experimental Film
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| A poorly drawn Bubs. | mile
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| A poorly drawn Poopsmith. | mile
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Virus
Image | Description | Appearences
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| This is a virus'd Homestar Runner. He has the body of The Homestar Runner and the head of the original. | virus, Main Page 22
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| This is a virus'd Strong Bad with an expanded boxing glove, Marzipan's hair, and a giant head. He spouts lines from The Luau. | Main Page 22
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| Another virus'd Strong Bad with a very disproportional head and one very long leg. He spouts lines from The Reddest Radish. | virus
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| A virus'd The Cheat. He flashes between his Awexome Cross version, the Reddest Radish version, a drawn version from Strong Bad's website, a neon-sign style one, drawn in Powered By The Cheat style, a Cheat X-ing sign, and a very pixelated version of him. | virus, The Reddest Radish, website
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| Virus'd Bubs, complete with 3D legs, a transparent belt, a broken JPEG from Mozilla Firefox for a face, an overly-large arm from Dancin' Bubs, and Homestar's leg instead of a shotgun. | virus
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| Virus'd Marzipan is an ASCII rendering of herself that makes distorted noises. | virus
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| Virus'd Strong Mad is his picture and information from the Yearbook Character Page. It wobbles away with Homsar's walking sound. | Yearbook Character Page, virus
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| Virus'd Strong Sad has his emoticons from Strong Sad's Lament for a head. His body walks on the spot. He eventually turns into his character card. | Strong Sad's Lament, Character Cards, virus
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| Virus'd The Ugly One has a stretched mouth. Her arm also stretches very far when she slaps the King of Town nine times. | virus
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Other